STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ53481.1Hypothetical protein. (348 aa)    
Predicted Functional Partners:
alsB
D-allose-binding periplasmic protein precursor.
 
   
 0.894
rbsA_1
Ribose import ATP-binding protein RbsA.
 
   
 0.889
rbsC_2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.851
rbsC_1
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
     0.785
adhD
Putative alcohol dehydrogenase D.
  
  
 0.715
hcnB_1
Hydrogen cyanide synthase subunit HcnB.
 
     0.429
AKQ55302.1
Hypothetical protein; BAAT / Acyl-CoA thioester hydrolase C terminal.
  
    0.418
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.