STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspNBacterial type II secretion system protein N. (258 aa)    
Predicted Functional Partners:
gspH
Hypothetical protein; Prokaryotic N-terminal methylation motif.
 
   
 0.958
gspK
General secretion pathway protein K.
 
   
 0.951
xcpW
Type II secretion system protein J precursor.
 
   
 0.951
gspI
Bacterial type II secretion system protein I/J.
 
   
 0.951
xcpT
Type II secretion system protein G precursor.
 
   
 0.863
AKQ53758.1
General secretion pathway, M protein.
     
 0.832
xcpQ
Type II secretion system protein D precursor.
 
   
 0.800
AKQ53759.1
GspL periplasmic domain protein.
       0.790
envZ_2
Osmolarity sensor protein EnvZ.
  
     0.695
AKQ54495.1
Hypothetical protein.
  
     0.674
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.