STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ53883.1Helix-turn-helix domain protein. (66 aa)    
Predicted Functional Partners:
AKQ53882.1
Hypothetical protein.
 
     0.539
banIM
Modification methylase BanI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.521
AKQ53874.1
F pilus assembly Type-IV secretion system for plasmid transfer.
 
     0.519
AKQ53873.1
DSBA-like thioredoxin domain protein.
 
     0.502
AKQ53881.1
Hypothetical protein.
       0.475
AKQ53875.1
Hypothetical protein.
       0.439
AKQ53876.1
Hypothetical protein.
       0.439
AKQ53877.1
Hypothetical protein.
       0.439
AKQ53878.1
Hypothetical protein.
       0.439
AKQ53879.1
Hypothetical protein.
       0.439
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.