STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frc_1Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family. (395 aa)    
Predicted Functional Partners:
yngG_3
Hydroxymethylglutaryl-CoA lyase YngG; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
 
  0.804
caiD_1
Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.791
mmgC_1
Acyl-CoA dehydrogenase.
  
 
  0.776
AKQ54105.1
2-methylcitrate dehydratase.
  
    0.699
AKQ54104.1
Long-chain-fatty-acid--CoA ligase FadD13.
     
 0.685
frlR
HTH-type transcriptional regulator FrlR.
       0.530
AKQ54111.1
Tripartite tricarboxylate transporter family receptor.
  
    0.423
hbpA_4
Heme-binding protein A precursor.
      
 0.405
hbpA_5
Heme-binding protein A precursor.
      
 0.405
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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