STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaHProtocatechuate 3,4-dioxygenase beta chain. (238 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
 0.999
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.996
pcaC
Carboxymuconolactone decarboxylase family protein.
 
  
 0.967
pht5
4,5-dihydroxyphthalate decarboxylase.
     
  0.900
AKQ54008.1
Carboxymuconolactone decarboxylase family protein.
 
  
 0.779
catD_1
3-oxoadipate enol-lactonase 2.
 
   
 0.745
gbpR_1
HTH-type transcriptional regulator GbpR; Belongs to the LysR transcriptional regulatory family.
 
   
 0.686
catC
Muconolactone Delta-isomerase.
 
  
 0.664
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
  
 0.437
pheA
P-protein.
      
 0.408
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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