STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araB_2L-arabinolactonase. (295 aa)    
Predicted Functional Partners:
proA_2
4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
     0.751
ghrB_2
Glyoxylate/hydroxypyruvate reductase B; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 0.644
AKQ53789.1
2-keto-3-deoxy-galactonokinase.
 
   
 0.641
garL_1
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.634
AKQ54252.1
Hypothetical protein; NIPSNAP.
 
     0.628
AKQ54250.1
Tripartite tricarboxylate transporter family receptor.
       0.610
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
   
 0.546
dgoD_1
D-galactonate dehydratase.
 
  
 0.515
kdgR_3
Transcriptional regulator KdgR.
       0.514
rplQ
50S ribosomal protein L17.
 
      0.468
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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