STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ54462.1MmgE/PrpD family protein. (475 aa)    
Predicted Functional Partners:
citE_1
Citrate lyase subunit beta-like protein; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.870
frc_3
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
 
    0.825
yurK_1
Putative HTH-type transcriptional regulator YurK.
 
     0.814
mmgC_2
Acyl-CoA dehydrogenase.
  
    0.791
paaZ_1
Bifunctional protein PaaZ.
 
    0.787
AKQ54463.1
Tripartite tricarboxylate transporter family receptor.
  
    0.783
AKQ56868.1
2,3-dimethylmalate lyase.
 
  
 0.579
bcpA
Carboxyvinyl-carboxyphosphonate phosphorylmutase.
 
  
 0.573
pphA_1
Phosphonopyruvate hydrolase.
 
  
 0.569
AKQ53812.1
Virulence protein.
 
    0.564
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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