Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKQ55917.1 | AKQ56897.1 | ACR54_02602 | ACR54_03607 | Ankyrin repeat protein. | Ankyrin repeats (3 copies). | 0.505 |
AKQ55917.1 | cph2_2 | ACR54_02602 | ACR54_02308 | Ankyrin repeat protein. | Phytochrome-like protein cph2. | 0.558 |
AKQ55917.1 | dac | ACR54_02602 | ACR54_01481 | Ankyrin repeat protein. | D-alanyl-D-alanine carboxypeptidase precursor. | 0.619 |
AKQ56897.1 | AKQ55917.1 | ACR54_03607 | ACR54_02602 | Ankyrin repeats (3 copies). | Ankyrin repeat protein. | 0.505 |
AKQ56897.1 | cph2_2 | ACR54_03607 | ACR54_02308 | Ankyrin repeats (3 copies). | Phytochrome-like protein cph2. | 0.558 |
AKQ56897.1 | dac | ACR54_03607 | ACR54_01481 | Ankyrin repeats (3 copies). | D-alanyl-D-alanine carboxypeptidase precursor. | 0.559 |
cph2_2 | AKQ55917.1 | ACR54_02308 | ACR54_02602 | Phytochrome-like protein cph2. | Ankyrin repeat protein. | 0.558 |
cph2_2 | AKQ56897.1 | ACR54_02308 | ACR54_03607 | Phytochrome-like protein cph2. | Ankyrin repeats (3 copies). | 0.558 |
cph2_2 | dac | ACR54_02308 | ACR54_01481 | Phytochrome-like protein cph2. | D-alanyl-D-alanine carboxypeptidase precursor. | 0.556 |
cph2_2 | upp | ACR54_02308 | ACR54_01482 | Phytochrome-like protein cph2. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.436 |
dac | AKQ55917.1 | ACR54_01481 | ACR54_02602 | D-alanyl-D-alanine carboxypeptidase precursor. | Ankyrin repeat protein. | 0.619 |
dac | AKQ56897.1 | ACR54_01481 | ACR54_03607 | D-alanyl-D-alanine carboxypeptidase precursor. | Ankyrin repeats (3 copies). | 0.559 |
dac | cph2_2 | ACR54_01481 | ACR54_02308 | D-alanyl-D-alanine carboxypeptidase precursor. | Phytochrome-like protein cph2. | 0.556 |
dac | dacC_1 | ACR54_01481 | ACR54_00157 | D-alanyl-D-alanine carboxypeptidase precursor. | D-alanyl-D-alanine carboxypeptidase DacC precursor; Belongs to the peptidase S11 family. | 0.912 |
dac | dacC_2 | ACR54_01481 | ACR54_00907 | D-alanyl-D-alanine carboxypeptidase precursor. | D-alanyl-D-alanine carboxypeptidase DacC precursor; Belongs to the peptidase S11 family. | 0.912 |
dac | ldcA | ACR54_01481 | ACR54_02154 | D-alanyl-D-alanine carboxypeptidase precursor. | Murein tetrapeptide carboxypeptidase. | 0.478 |
dac | queA | ACR54_01481 | ACR54_01480 | D-alanyl-D-alanine carboxypeptidase precursor. | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.515 |
dac | tgt | ACR54_01481 | ACR54_01479 | D-alanyl-D-alanine carboxypeptidase precursor. | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] | 0.532 |
dac | upp | ACR54_01481 | ACR54_01482 | D-alanyl-D-alanine carboxypeptidase precursor. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.663 |
dac | ykfA | ACR54_01481 | ACR54_02333 | D-alanyl-D-alanine carboxypeptidase precursor. | Putative murein peptide carboxypeptidase. | 0.572 |
page 1 of 2