STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livH_14High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (630 aa)    
Predicted Functional Partners:
lptB_9
Lipopolysaccharide export system ATP-binding protein LptB.
  
 0.969
livF_14
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
  
 0.966
livF_35
High-affinity branched-chain amino acid transport ATP-binding protein LivF; Belongs to the binding-protein-dependent transport system permease family.
  
  
0.966
amiC_2
Aliphatic amidase expression-regulating protein.
 
  
 0.926
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
  
 0.884
AKQ56633.1
Receptor family ligand binding region.
 
  
 0.880
AKQ56583.1
Receptor family ligand binding region.
 
  
 0.879
livF_25
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
  
 0.874
livF_20
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
  
  
 0.864
lptB_14
Lipopolysaccharide export system ATP-binding protein LptB.
 
  
 0.864
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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