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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_14HTH-type transcriptional regulator DmlR; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
fabG_14
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
     0.707
cynR_3
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.650
yofA_2
HTH-type transcriptional regulator YofA; Belongs to the LysR transcriptional regulatory family.
  
     0.581
cmpR_9
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.573
cynR_8
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.558
gbpR_1
HTH-type transcriptional regulator GbpR; Belongs to the LysR transcriptional regulatory family.
  
     0.547
benM_1
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
  
     0.543
cynR_12
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.525
ydhP_1
Inner membrane transport protein YdhP.
  
    0.517
cynR_11
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.498
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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