STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hin_1DNA-invertase hin. (451 aa)    
Predicted Functional Partners:
AKQ56412.1
Hypothetical protein.
 
  
 0.954
AKQ56417.1
Helix-turn-helix domain protein.
 
  
 0.848
AKQ56420.1
Hypothetical protein.
 
   
 0.848
AKQ56425.1
Hypothetical protein.
 
   
 0.845
AKQ56418.1
Hypothetical protein.
 
     0.841
AKQ56421.1
Hypothetical protein.
 
     0.840
AKQ56422.1
ATP-dependent RNA helicase DbpA.
 
  
 0.831
yhdJ
DNA adenine methyltransferase YhdJ.
 
  
 0.830
AKQ56424.1
Hypothetical protein.
 
     0.821
pvuIIM
Modification methylase PvuII; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.820
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.