STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ57178.1Tyrosine kinase. (349 aa)    
Predicted Functional Partners:
kpsT_2
Polysialic acid transport ATP-binding protein KpsT.
 
 
 0.989
kpsM_2
Polysialic acid transport protein KpsM.
 
 
 0.988
kpsM_1
Polysialic acid transport protein KpsM.
 
 
 0.983
kpsT_1
Polysialic acid transport ATP-binding protein KpsT.
 
 
 0.979
AKQ57195.1
Capsule polysaccharide biosynthesis protein.
 
 
 0.965
AKQ57181.1
Polysaccharide biosynthesis/export protein.
 
  
 0.937
wcbD
Hypothetical protein.
  
  
 
0.928
AKQ57194.1
Capsule polysaccharide biosynthesis protein.
 
 
 
 0.835
ykvP
Spore protein YkvP.
 
     0.824
AKQ57174.1
Hypothetical protein.
 
     0.821
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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