STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppB_5Dipeptide transport system permease protein DppB. (325 aa)    
Predicted Functional Partners:
ddpC_6
Putative D,D-dipeptide transport system permease protein DdpC.
  
 0.965
oppD_8
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.932
oppF_7
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.914
hbpA_4
Heme-binding protein A precursor.
 
 0.895
ddpC_4
Putative D,D-dipeptide transport system permease protein DdpC.
  
 0.849
ddpC_7
Putative D,D-dipeptide transport system permease protein DdpC.
  
 0.849
ddpC_2
Putative D,D-dipeptide transport system permease protein DdpC.
  
 0.844
oppC_2
Oligopeptide transport system permease protein OppC.
  
 0.844
ddpC_3
Putative D,D-dipeptide transport system permease protein DdpC.
  
 0.840
ddpC_5
Putative D,D-dipeptide transport system permease protein DdpC.
  
 0.840
Your Current Organism:
Bordetella hinzii
NCBI taxonomy Id: 103855
Other names: ATCC 51783, B. hinzii, CCUG 33847, CIP 104527, DSM 11333, JCM 15550, LMG 13501, LMG:13501, NCTC 13199, strain TC58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.