Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APV38280.1 | APV38281.1 | PFAS1_02590 | PFAS1_02595 | Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.996 |
APV38280.1 | APV38282.1 | PFAS1_02590 | PFAS1_02600 | Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.519 |
APV38280.1 | APV38283.1 | PFAS1_02590 | PFAS1_02605 | Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF sub [...] | 0.453 |
APV38281.1 | APV38280.1 | PFAS1_02595 | PFAS1_02590 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.996 |
APV38281.1 | APV38282.1 | PFAS1_02595 | PFAS1_02600 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.588 |
APV38281.1 | APV38283.1 | PFAS1_02595 | PFAS1_02605 | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF sub [...] | 0.450 |
APV38282.1 | APV38280.1 | PFAS1_02600 | PFAS1_02590 | Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.519 |
APV38282.1 | APV38281.1 | PFAS1_02600 | PFAS1_02595 | Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.588 |
APV38282.1 | APV38283.1 | PFAS1_02600 | PFAS1_02605 | Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF sub [...] | 0.489 |
APV38283.1 | APV38280.1 | PFAS1_02605 | PFAS1_02590 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF sub [...] | Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.453 |
APV38283.1 | APV38281.1 | PFAS1_02605 | PFAS1_02595 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF sub [...] | DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
APV38283.1 | APV38282.1 | PFAS1_02605 | PFAS1_02600 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF sub [...] | Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.489 |