STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APV42251.1Phenylacetaldoxime dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)    
Predicted Functional Partners:
APV42250.1
Phenol degradation protein meta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.740
APV43238.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.685
APV41784.1
AcsA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
APV40199.1
Phosphorylcholine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
APV42345.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
APV42247.1
Nitrile hydratase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.502
APV42249.1
Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.480
APV42248.1
Nitrile hydratase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.456
APV39822.1
Choline-sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
APV41789.1
Siderophore-iron reductase, Fe-S cluster protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
Your Current Organism:
Pseudomonas frederiksbergensis
NCBI taxonomy Id: 104087
Other names: ATCC BAA-257, CIP 106887, DSM 13022, LMG 19851, LMG:19851, P. frederiksbergensis, Pseudomonas frederiksbergensis Andersen et al. 2000, Pseudomonas sp. BDR1P1B1, Pseudomonas sp. BDR1P1B2, Pseudomonas sp. V1D5a, strain JAJ28
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