STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaD3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
KXV65723.1
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.867
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.856
catC
Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the muconolactone Delta-isomerase family.
 
 
 0.841
catB
Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.795
KXV65760.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.744
lpdA
Catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.677
KXV65603.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.634
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.578
KXV65721.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
 
     0.539
atpD
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.517
Your Current Organism:
Acetobacter orleanensis
NCBI taxonomy Id: 104099
Other names: A. orleanensis, ATCC 12876, Acetobacter aceti subsp. orleanensis, Acetobacter mesoxydans, Acetobacter orleanense, Bacillus orleanensis, Bacterium dihydroxyacetonicum, Bacterium orleanense, CCUG 18126, DSM 4492, IFO 13752, JCM 7639, NBRC 13752, NCCB 31003, NCIMB 8622, Ulvina orleanense
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