Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AtDm6_0130 | AtDm6_0774 | Putative polyphosphate-selective porin O. | Putative helicase. | 0.407 |
AtDm6_0130 | AtDm6_1648 | Putative polyphosphate-selective porin O. | RND-type multidrug efflux pump, outer membrane protein. | 0.722 |
AtDm6_0130 | AtDm6_1649 | Putative polyphosphate-selective porin O. | RND-type multidrug efflux pump, membrane permease. | 0.720 |
AtDm6_0773 | AtDm6_0774 | Prophage Lp2 protein 6. | Putative helicase. | 0.469 |
AtDm6_0774 | AtDm6_0130 | Putative helicase. | Putative polyphosphate-selective porin O. | 0.407 |
AtDm6_0774 | AtDm6_0773 | Putative helicase. | Prophage Lp2 protein 6. | 0.469 |
AtDm6_0774 | AtDm6_1648 | Putative helicase. | RND-type multidrug efflux pump, outer membrane protein. | 0.472 |
AtDm6_0774 | AtDm6_1649 | Putative helicase. | RND-type multidrug efflux pump, membrane permease. | 0.438 |
AtDm6_1648 | AtDm6_0130 | RND-type multidrug efflux pump, outer membrane protein. | Putative polyphosphate-selective porin O. | 0.722 |
AtDm6_1648 | AtDm6_0774 | RND-type multidrug efflux pump, outer membrane protein. | Putative helicase. | 0.472 |
AtDm6_1648 | AtDm6_1649 | RND-type multidrug efflux pump, outer membrane protein. | RND-type multidrug efflux pump, membrane permease. | 0.962 |
AtDm6_1649 | AtDm6_0130 | RND-type multidrug efflux pump, membrane permease. | Putative polyphosphate-selective porin O. | 0.720 |
AtDm6_1649 | AtDm6_0774 | RND-type multidrug efflux pump, membrane permease. | Putative helicase. | 0.438 |
AtDm6_1649 | AtDm6_1648 | RND-type multidrug efflux pump, membrane permease. | RND-type multidrug efflux pump, outer membrane protein. | 0.962 |