Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AtDm6_0809Hypothetical protein. (453 aa)    
Predicted Functional Partners:
AtDm6_0760
UDP-glucose dehydrogenase.
  
  
 0.828
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.828
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.828
RfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.825
Glf
UDP-galactopyranose mutase.
  
  
 0.819
AtDm6_0810
Hypothetical protein; Similar to nucleoside-diphosphate-sugar epimerase.
 
     0.800
AtDm6_3454
Hypothetical protein.
 
  
 0.782
AtDm6_2281
Hypothetical protein.
 
  
 0.770
AtDm6_2286
Hypothetical protein.
 
     0.770
AtDm6_2291
Hypothetical protein.
 
     0.761
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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