Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AccB | AtDm6_2305 | AtDm6_1880 | AtDm6_2305 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Biotin-protein ligase. | 0.950 |
AccB | FabF | AtDm6_1880 | AtDm6_2981 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.641 |
AccB | RibD | AtDm6_1880 | AtDm6_1485 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.693 |
AccB | Uca | AtDm6_1880 | AtDm6_0965 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Urea carboxylase. | 0.994 |
AccB | accA | AtDm6_1880 | AtDm6_1364 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Acetyl-coenzyme A carboxyl transferase alpha chain; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | 0.996 |
AccB | accD | AtDm6_1880 | AtDm6_3657 | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Acetyl-coenzyme A carboxyl transferase beta chain; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.999 |
AtDm6_0966 | AtDm6_0967 | AtDm6_0966 | AtDm6_0967 | Urea carboxylase-related aminomethyltransferase. | Urea carboxylase-related aminomethyltransferase. | 0.850 |
AtDm6_0966 | AtzF | AtDm6_0966 | AtDm6_0964 | Urea carboxylase-related aminomethyltransferase. | Allophanate hydrolase. | 0.906 |
AtDm6_0966 | Uca | AtDm6_0966 | AtDm6_0965 | Urea carboxylase-related aminomethyltransferase. | Urea carboxylase. | 0.912 |
AtDm6_0967 | AtDm6_0966 | AtDm6_0967 | AtDm6_0966 | Urea carboxylase-related aminomethyltransferase. | Urea carboxylase-related aminomethyltransferase. | 0.850 |
AtDm6_0967 | AtzF | AtDm6_0967 | AtDm6_0964 | Urea carboxylase-related aminomethyltransferase. | Allophanate hydrolase. | 0.907 |
AtDm6_0967 | Uca | AtDm6_0967 | AtDm6_0965 | Urea carboxylase-related aminomethyltransferase. | Urea carboxylase. | 0.910 |
AtDm6_1579 | Uca | AtDm6_1579 | AtDm6_0965 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit. | Urea carboxylase. | 0.556 |
AtDm6_2305 | AccB | AtDm6_2305 | AtDm6_1880 | Biotin-protein ligase. | Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.950 |
AtDm6_2305 | FabF | AtDm6_2305 | AtDm6_2981 | Biotin-protein ligase. | 3-oxoacyl-[acyl-carrier-protein] synthase, KASII; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.569 |
AtDm6_2305 | RibD | AtDm6_2305 | AtDm6_1485 | Biotin-protein ligase. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.473 |
AtDm6_2305 | Uca | AtDm6_2305 | AtDm6_0965 | Biotin-protein ligase. | Urea carboxylase. | 0.872 |
AtzF | AtDm6_0966 | AtDm6_0964 | AtDm6_0966 | Allophanate hydrolase. | Urea carboxylase-related aminomethyltransferase. | 0.906 |
AtzF | AtDm6_0967 | AtDm6_0964 | AtDm6_0967 | Allophanate hydrolase. | Urea carboxylase-related aminomethyltransferase. | 0.907 |
AtzF | Uca | AtDm6_0964 | AtDm6_0965 | Allophanate hydrolase. | Urea carboxylase. | 0.999 |
page 1 of 3