STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AtDm6_12372-methylcitrate dehydratase. (520 aa)    
Predicted Functional Partners:
AtDm6_1235
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
  
 0.959
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
  
 0.884
AtDm6_1236
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
  
 0.849
AtDm6_1238
Transcriptional regulator, XRE family.
 
  
 0.733
AtDm6_3614
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
  
 0.613
AtDm6_1234
Acetyl-coenzyme A synthetase.
  
  
 0.606
gltA
Citrate synthase (si); Belongs to the citrate synthase family.
  
  
 0.563
AtDm6_3616
Transcriptional regulator, XRE family.
 
  
 0.466
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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