Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AtDm6_0743 | AtDm6_1403 | AtDm6_0743 | AtDm6_1403 | Ribonuclease D related protein. | 3'-to-5' exoribonuclease RNase R. | 0.927 |
AtDm6_0743 | AtDm6_2248 | AtDm6_0743 | AtDm6_2248 | Ribonuclease D related protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.983 |
AtDm6_0743 | rpmC | AtDm6_0743 | AtDm6_0410 | Ribonuclease D related protein. | LSU ribosomal protein L29p (L35e); Belongs to the universal ribosomal protein uL29 family. | 0.429 |
AtDm6_1403 | AtDm6_0743 | AtDm6_1403 | AtDm6_0743 | 3'-to-5' exoribonuclease RNase R. | Ribonuclease D related protein. | 0.927 |
AtDm6_1403 | AtDm6_1404 | AtDm6_1403 | AtDm6_1404 | 3'-to-5' exoribonuclease RNase R. | Hypothetical protein. | 0.850 |
AtDm6_1403 | AtDm6_1405 | AtDm6_1403 | AtDm6_1405 | 3'-to-5' exoribonuclease RNase R. | Protein of unknown function DUF1491. | 0.807 |
AtDm6_1403 | AtDm6_2248 | AtDm6_1403 | AtDm6_2248 | 3'-to-5' exoribonuclease RNase R. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.994 |
AtDm6_1403 | AtDm6_2816 | AtDm6_1403 | AtDm6_2816 | 3'-to-5' exoribonuclease RNase R. | Hypothetical protein. | 0.852 |
AtDm6_1403 | gltX | AtDm6_1403 | AtDm6_1397 | 3'-to-5' exoribonuclease RNase R. | Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.792 |
AtDm6_1403 | rnd | AtDm6_1403 | AtDm6_2166 | 3'-to-5' exoribonuclease RNase R. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.963 |
AtDm6_1403 | rpmC | AtDm6_1403 | AtDm6_0410 | 3'-to-5' exoribonuclease RNase R. | LSU ribosomal protein L29p (L35e); Belongs to the universal ribosomal protein uL29 family. | 0.783 |
AtDm6_1403 | rppH | AtDm6_1403 | AtDm6_0456 | 3'-to-5' exoribonuclease RNase R. | Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.878 |
AtDm6_1403 | topA | AtDm6_1403 | AtDm6_1402 | 3'-to-5' exoribonuclease RNase R. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.819 |
AtDm6_1404 | AtDm6_1403 | AtDm6_1404 | AtDm6_1403 | Hypothetical protein. | 3'-to-5' exoribonuclease RNase R. | 0.850 |
AtDm6_1404 | AtDm6_1405 | AtDm6_1404 | AtDm6_1405 | Hypothetical protein. | Protein of unknown function DUF1491. | 0.798 |
AtDm6_1404 | gltX | AtDm6_1404 | AtDm6_1397 | Hypothetical protein. | Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.665 |
AtDm6_1404 | topA | AtDm6_1404 | AtDm6_1402 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.822 |
AtDm6_1405 | AtDm6_1403 | AtDm6_1405 | AtDm6_1403 | Protein of unknown function DUF1491. | 3'-to-5' exoribonuclease RNase R. | 0.807 |
AtDm6_1405 | AtDm6_1404 | AtDm6_1405 | AtDm6_1404 | Protein of unknown function DUF1491. | Hypothetical protein. | 0.798 |
AtDm6_1405 | gltX | AtDm6_1405 | AtDm6_1397 | Protein of unknown function DUF1491. | Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.657 |
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