STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AtDm6_1925Conserved protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family. (126 aa)    
Predicted Functional Partners:
rutF
Putative flavin reductase RutF in pyrimidine catabolism pathway.
  
  
 
0.910
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
     
  0.900
AtDm6_1955
Nitrilotriacetate monooxygenase component B.
  
     0.763
AtDm6_1926
Hypothetical protein.
       0.572
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
  
 
 0.569
BluB
Cobalamin biosynthesis protein BluB 5,6-dimethylbenzimidazole synthase, flavin destructase family.
  
 
 0.545
RibF
Riboflavin kinase; FMN adenylyltransferase; Belongs to the ribF family.
    
  0.509
rutE
Putative reductase RutE in pyrimidine catabolism pathway.
  
  
 0.427
AtDm6_1962
Pigment protein.
 
  
 0.419
AtDm6_1927
4-hydroxyphenylacetate 3-monooxygenase.
 
  
 0.407
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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