STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AtDm6_1997Transcriptional activator MetR; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
AtDm6_1996
Hypothetical protein.
       0.572
AtDm6_1577
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.538
AtDm6_1571
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.524
AtDm6_2592
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.470
AtDm6_2606
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.449
AtDm6_3314
Glutamate synthase [NADPH] large chain.
  
  
 0.409
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.