STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AtDm6_2139Hypothetical protein. (179 aa)    
Predicted Functional Partners:
AtDm6_2141
Hypothetical protein.
 
     0.777
AtDm6_2384
Outer membrane lipoprotein OmlA.
  
     0.769
leuS
Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.752
AtDm6_3550
Hypothetical protein.
  
     0.730
AtDm6_1419
Hypothetical protein.
  
     0.727
mrdA
Penicillin-binding protein 2 (PBP-2).
  
     0.725
AtDm6_2142
DNA polymerase III delta subunit.
 
     0.710
AtDm6_1540
DinG family ATP-dependent helicase YoaA.
  
     0.702
bamB
Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB).
  
    0.692
AtDm6_0475
Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA).
  
   
 0.686
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.