STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCIron-sulfur cluster assembly ATPase protein SufC. (256 aa)    
Predicted Functional Partners:
SufD
Iron-sulfur cluster assembly protein SufD.
 
 
 0.999
AtDm6_2334
Iron-sulfur cluster assembly protein SufB.
 
 0.999
iscU
SUF system FeS assembly protein, NifU family.
 
  
 0.990
AtDm6_2331
Cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.988
AtDm6_2329
PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
 
  
 0.961
AtDm6_2335
Iron-sulfur cluster regulator IscR.
 
   
 0.834
AtDm6_2156
Cysteine desulfurase.
 
  
 0.790
AtDm6_3676
Hypothetical protein.
  
  
 0.759
AtDm6_3456
Sulfur acceptor protein SufE for iron-sulfur cluster assembly.
 
   0.745
AtDm6_2574
Putative iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.
  
 
 0.518
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.