STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AtDm6_2452Nitrogen regulation protein NR(II). (369 aa)    
Predicted Functional Partners:
ntrC
Nitrogen regulation protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
 0.997
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.980
cvgSY
Sensory box histidine kinase/response regulator.
 
 
0.957
AtDm6_2449
Nitrogen regulation protein NtrX.
 
 0.909
AtDm6_2453
tRNA dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.851
glnK
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.810
AtDm6_2450
Nitrogen regulation protein NtrY.
 
   
0.700
AtDm6_1525
Ammonium transporter.
  
 
 0.675
AtDm6_2221
Hypothetical protein.
 
 
 
 0.641
AtDm6_0030
Phosphate regulon transcriptional regulatory protein PhoB (SphR).
  
 
 
 0.627
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.