STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AtDm6_2543TonB-dependent siderophore receptor. (774 aa)    
Predicted Functional Partners:
AtDm6_3218
Iron-uptake factor PiuC.
 
  
 0.838
AtDm6_0086
Iron-uptake factor PiuC.
 
  
 0.835
AtDm6_1225
Long-chain-fatty-acid--CoA ligase.
 
  
 0.784
AtDm6_3212
Ferric siderophore transport system, periplasmic binding protein TonB.
 
   
 0.710
AtDm6_2003
Optional hypothetical component of the B12 transporter BtuN.
 
  
 0.653
AtDm6_2847
Hypothetical protein.
  
    0.631
AtDm6_1085
TonB-dependent receptor.
  
    0.478
AtDm6_2743
Phage integrase; Belongs to the 'phage' integrase family.
  
    0.475
AtDm6_1706
Putative iron-regulated membrane protein.
 
  
 0.421
AtDm6_1500
Hypothetical protein.
  
     0.406
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.