STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AtDm6_3064Phage terminase large subunit. (525 aa)    
Predicted Functional Partners:
AtDm6_3059
Phage portal protein.
 
   
 0.825
AtDm6_3061
Hypothetical protein.
 
     0.821
AtDm6_3060
Phage prohead protease, HK97 family.
 
     0.791
AtDm6_2674
Phage portal protein.
 
   
 0.786
AtDm6_3370
Phage portal protein.
 
   
 0.786
AtDm6_2672
Phage major capsid protein, HK97.
 
     0.776
AtDm6_3372
Phage major capsid protein.
 
     0.766
AtDm6_3369
Phage terminase large subunit.
  
     0.735
AtDm6_2673
Prophage Clp protease-like protein; Belongs to the peptidase S14 family.
 
     0.571
AtDm6_3386
BRO domain protein.
 
     0.540
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.