STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AtDm6_3254Nitrilase. (324 aa)    
Predicted Functional Partners:
AtDm6_3257
Selenophosphate synthetase-related.
 
   
 0.954
AtDm6_3259
NAD/NADP transhydrogenase alpha subunit.
 
  
 0.954
AtDm6_3255
Biotin synthase-related enzyme.
 
     0.952
AtDm6_3256
Histone acetyltransferase HPA2 and related acetyltransferase.
 
     0.952
AtDm6_3260
Putative monooxygenase.
 
  
 0.940
AtDm6_3253
Hypothetical protein.
 
     0.935
AtDm6_3258
Glycosyltransferase.
 
    0.908
AtDm6_3261
Acetyl-coenzyme A synthetase.
  
    0.694
AtDm6_3252
Transcriptional regulator, GntR family domain; Aspartate aminotransferase.
 
    0.575
AtDm6_2577
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit.
  
 
 0.518
Your Current Organism:
Acetobacter tropicalis
NCBI taxonomy Id: 104102
Other names: A. tropicalis, Acetobacter tropicalis Lisdiyanti et al. 2001, IFO 16470, JCM 10947, LMG 19825, LMG:19825, NBRC 16470, NRIC 0312, strain Ni-6b
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.