STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAK46401.1Hypothetical protein. (500 aa)    
Predicted Functional Partners:
BAK46400.1
Hypothetical protein.
 
 
 0.999
BAK46398.1
Hypothetical protein.
 
 
 0.968
BAK46402.1
Hypothetical protein.
 
 
   0.859
BAK47819.1
Hypothetical protein.
 
  
 0.719
BAK46754.1
Hypothetical protein.
  
 
 0.620
BAK46755.1
Hypothetical protein.
  
 
 0.620
UvrB
Helicase subunit of the DNA excision repair complex; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the [...]
   
 
 0.564
BAK47808.1
Hypothetical protein.
  
  
 0.515
BAK47806.1
Hypothetical protein.
  
    0.509
BAK47812.1
Hypothetical protein.
  
    0.488
Your Current Organism:
Clostridium sp. SY8519
NCBI taxonomy Id: 1042156
Other names: C. sp. SY8519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.