STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000220525_01851Unannotated protein. (287 aa)    
Predicted Functional Partners:
GCA_000220525_01850
Unannotated protein.
 
     0.805
GCA_000220525_01852
Unannotated protein.
       0.782
GCA_000220525_01853
Unannotated protein.
       0.742
GCA_000220525_00131
Unannotated protein.
  
    0.674
GCA_000220525_00132
Unannotated protein.
  
    0.665
GCA_000220525_01733
Unannotated protein.
  
     0.630
GCA_000220525_01854
Unannotated protein.
       0.601
GCA_000220525_01855
Unannotated protein.
       0.584
GCA_000220525_00135
Unannotated protein.
  
     0.560
GCA_000220525_01849
Unannotated protein.
       0.557
Your Current Organism:
Ochrovirga pacifica
NCBI taxonomy Id: 1042376
Other names: Flavobacteriaceae bacterium S85, JCM 18327, KCCM 90106, O. pacifica, strain S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.