STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000220525_02242Unannotated protein. (580 aa)    
Predicted Functional Partners:
GCA_000220525_02241
Unannotated protein.
 
 
   0.950
GCA_000220525_01762
Unannotated protein.
  
 
   0.816
GCA_000220525_02174
Unannotated protein.
  
 
   0.814
GCA_000220525_00081
Unannotated protein.
  
 
   0.813
GCA_000220525_01774
Unannotated protein.
  
 
   0.813
GCA_000220525_02170
Unannotated protein.
  
 
   0.813
GCA_000220525_02837
Unannotated protein.
  
 
   0.801
GCA_000220525_01670
Unannotated protein.
  
     0.775
GCA_000220525_02243
Unannotated protein.
       0.746
GCA_000220525_02308
Unannotated protein.
  
 
   0.738
Your Current Organism:
Ochrovirga pacifica
NCBI taxonomy Id: 1042376
Other names: Flavobacteriaceae bacterium S85, JCM 18327, KCCM 90106, O. pacifica, strain S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.