STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMG11_00103Uncharacterized protein. (257 aa)    
Predicted Functional Partners:
PMG11_01699
Uncharacterized protein.
    
 0.640
PMG11_09301
SMN domain-containing protein.
    
 0.619
PMG11_02337
ERCC4 domain-containing protein.
    
 0.609
PMG11_06874
DNA polymerase.
   
 0.601
PMG11_05229
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.590
PMG11_03403
3'-5' exonuclease domain-containing protein.
    
 0.585
PMG11_08995
Putative Chromatin assembly factor 1 subunit C.
    
  0.581
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.578
PMG11_01127
ANK_REP_REGION domain-containing protein.
    
  0.578
PMG11_11404
ANK_REP_REGION domain-containing protein.
    
  0.578
Your Current Organism:
Penicillium brasilianum
NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947
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