STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMG11_00620Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)    
Predicted Functional Partners:
PMG11_06796
Putative Pre-mRNA splicing factor ini1.
   
 0.999
PMG11_10573
Putative Pre-mRNA branch site protein p14.
   
 0.999
PMG11_04949
Putative U2 snrnp component prp10.
    
 0.999
PMG11_10584
Putative Splicing factor 3b.
    
 0.998
rse1
Putative Splicing factor 3B subunit 3/pre mRNA splicing factor rse1.
   
 0.998
PMG11_03225
Putative Splicing factor 3b subunit 4.
   
 0.998
sap62
Putative Splicing factor 3a subunit 2.
   
 0.995
PMG11_07656
Putative DEAD/DEAH box RNA helicase.
    
 0.994
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.993
PMG11_07337
Small nuclear ribonucleoprotein Sm D2.
   
 0.992
Your Current Organism:
Penicillium brasilianum
NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.