PMG11_00480 protein (Penicillium brasilianum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PMG11_00480

Uncharacterized protein. (364 aa)

Predicted Functional Partners:

PMG11_00716

0.999

MRP2

0.999

PMG11_02401

0.999

PMG11_07168

0.999

PMG11_07459

0.999

PMG11_08839

0.999

ndk1

0.999

PMG11_03047

0.999

PMG11_03430

0.999

PMG11_00574

0.996

Your Current Organism:

Penicillium brasilianum

NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MRP2	PMG11_00480	A0A0F7TKM8	A0A0F7TGN7	37S ribosomal protein MRP2, mitochondrial.	Uncharacterized protein.	0.999
MRP2	PMG11_00574	A0A0F7TKM8	A0A0F7TC63	37S ribosomal protein MRP2, mitochondrial.	Putative 40S ribosomal protein S19.	0.995
MRP2	PMG11_00716	A0A0F7TKM8	A0A0F7TEQ4	37S ribosomal protein MRP2, mitochondrial.	Putative 40S ribosomal protein S2.	0.999
MRP2	PMG11_02401	A0A0F7TKM8	A0A0F7TMH7	37S ribosomal protein MRP2, mitochondrial.	Putative 30S ribosomal protein S15.	0.999
MRP2	PMG11_03047	A0A0F7TKM8	A0A0F7VCG7	37S ribosomal protein MRP2, mitochondrial.	Putative 37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
MRP2	PMG11_03430	A0A0F7TKM8	A0A0F7VFH5	37S ribosomal protein MRP2, mitochondrial.	Uncharacterized protein.	0.999
MRP2	PMG11_07168	A0A0F7TKM8	A0A0F7TP82	37S ribosomal protein MRP2, mitochondrial.	Putative 37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
MRP2	PMG11_07459	A0A0F7TKM8	A0A0F7TPV3	37S ribosomal protein MRP2, mitochondrial.	Putative 37S ribosomal protein S12.	0.999
MRP2	PMG11_08839	A0A0F7TKM8	A0A0F7TTZ6	37S ribosomal protein MRP2, mitochondrial.	Putative 37S ribosomal protein S16 (AFU_orthologue AFUA_5G08350).	0.999
MRP2	ndk1	A0A0F7TKM8	A0A0F7TWQ0	37S ribosomal protein MRP2, mitochondrial.	Nucleoside diphosphate kinase.	0.999
PMG11_00480	MRP2	A0A0F7TGN7	A0A0F7TKM8	Uncharacterized protein.	37S ribosomal protein MRP2, mitochondrial.	0.999
PMG11_00480	PMG11_00574	A0A0F7TGN7	A0A0F7TC63	Uncharacterized protein.	Putative 40S ribosomal protein S19.	0.996
PMG11_00480	PMG11_00716	A0A0F7TGN7	A0A0F7TEQ4	Uncharacterized protein.	Putative 40S ribosomal protein S2.	0.999
PMG11_00480	PMG11_02401	A0A0F7TGN7	A0A0F7TMH7	Uncharacterized protein.	Putative 30S ribosomal protein S15.	0.999
PMG11_00480	PMG11_03047	A0A0F7TGN7	A0A0F7VCG7	Uncharacterized protein.	Putative 37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
PMG11_00480	PMG11_03430	A0A0F7TGN7	A0A0F7VFH5	Uncharacterized protein.	Uncharacterized protein.	0.999
PMG11_00480	PMG11_07168	A0A0F7TGN7	A0A0F7TP82	Uncharacterized protein.	Putative 37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
PMG11_00480	PMG11_07459	A0A0F7TGN7	A0A0F7TPV3	Uncharacterized protein.	Putative 37S ribosomal protein S12.	0.999
PMG11_00480	PMG11_08839	A0A0F7TGN7	A0A0F7TTZ6	Uncharacterized protein.	Putative 37S ribosomal protein S16 (AFU_orthologue AFUA_5G08350).	0.999
PMG11_00480	ndk1	A0A0F7TGN7	A0A0F7TWQ0	Uncharacterized protein.	Nucleoside diphosphate kinase.	0.999