STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMG11_01150RING-CH-type domain-containing protein. (279 aa)    
Predicted Functional Partners:
PMG11_03967
Putative UBX domain protein.
    
 
 0.843
PEBR_34252
FK506-binding protein.
    
 
 0.826
PMG11_00254
Putative AMFR protein.
    
 
 0.770
PEBR_23264
Putative NOT2 family protein.
    
 
 0.770
PMG11_01522
Putative Ubiquitin-conjugating enzyme Ubc6.
    
 
 0.704
ubc7
Ubiquitin-conjugating enzyme E2-18 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.673
PMG11_09314
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 
 0.594
PMG11_06281
Putative RING finger domain-containing protein.
    
 
 0.591
PMG11_04943
Uncharacterized protein.
    
 
 0.591
PMG11_01502
Putative AAA-type ATPase.
    
 
 0.575
Your Current Organism:
Penicillium brasilianum
NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947
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