STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMG11_02856Putative Function: CD2BP of H. sapiens binds a cytoplamic region of CD2. (449 aa)    
Predicted Functional Partners:
PMG11_06268
Putative RNA-dependent ATPase RNA helicase.
   
 
 0.980
PMG11_01863
Putative Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; Belongs to the DEAD box helicase family.
   
 
 0.949
PMG11_02496
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.948
PMG11_10945
Putative Pre-mRNA splicing factor prp1.
   
 
 0.935
PMG11_03246
Putative Elongation factor 2.
    
 
 0.934
PMG11_02055
Putative Pre-mRNA processing splicing factor 8.
    
 
 0.930
PMG11_01682
Putative Small nuclear ribonucleoprotein-associated protein B.
    
 
 0.921
PMG11_09324
Putative U4/U6.U5 snRNP associated protein.
   
 
 0.920
PMG11_07857
Uncharacterized protein.
   
 
 0.865
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.818
Your Current Organism:
Penicillium brasilianum
NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947
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