PMG11_10977 protein (Penicillium brasilianum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PMG11_10977

T5orf172 domain-containing protein. (420 aa)

Predicted Functional Partners:

PMG11_05934

0.821

PMG11_07900

0.811

PMG11_00244

0.781

PMG11_07770

0.756

PMG11_01079

0.746

PMG11_05370

0.705

PMG11_06686

0.677

PMG11_07333

0.664

PMG11_09301

0.664

PMG11_01065

0.654

Your Current Organism:

Penicillium brasilianum

NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMG11_00244	PMG11_01065	A0A0F7TBF3	A0A0F7TE19	Putative RNA polymerase II assessory factor Cdc73p.	Putative SCF ubiquitin ligase, Rbx1 component.	0.678
PMG11_00244	PMG11_01079	A0A0F7TBF3	A0A0F7TGZ2	Putative RNA polymerase II assessory factor Cdc73p.	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	0.999
PMG11_00244	PMG11_06686	A0A0F7TBF3	A0A0F7TMV1	Putative RNA polymerase II assessory factor Cdc73p.	CPSF_A domain-containing protein.	0.680
PMG11_00244	PMG11_07333	A0A0F7TBF3	A0A0F7TPP3	Putative RNA polymerase II assessory factor Cdc73p.	Putative Function: CUL-4A of H. sapiens is a member of the cullin/Cdc53 family of proteins; Belongs to the cullin family.	0.561
PMG11_00244	PMG11_07770	A0A0F7TBF3	A0A0F7TUP4	Putative RNA polymerase II assessory factor Cdc73p.	Uncharacterized protein.	0.999
PMG11_00244	PMG11_10977	A0A0F7TBF3	A0A0F7U456	Putative RNA polymerase II assessory factor Cdc73p.	T5orf172 domain-containing protein.	0.781
PMG11_01065	PMG11_00244	A0A0F7TE19	A0A0F7TBF3	Putative SCF ubiquitin ligase, Rbx1 component.	Putative RNA polymerase II assessory factor Cdc73p.	0.678
PMG11_01065	PMG11_01079	A0A0F7TE19	A0A0F7TGZ2	Putative SCF ubiquitin ligase, Rbx1 component.	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	0.740
PMG11_01065	PMG11_06686	A0A0F7TE19	A0A0F7TMV1	Putative SCF ubiquitin ligase, Rbx1 component.	CPSF_A domain-containing protein.	0.999
PMG11_01065	PMG11_07333	A0A0F7TE19	A0A0F7TPP3	Putative SCF ubiquitin ligase, Rbx1 component.	Putative Function: CUL-4A of H. sapiens is a member of the cullin/Cdc53 family of proteins; Belongs to the cullin family.	0.982
PMG11_01065	PMG11_07770	A0A0F7TE19	A0A0F7TUP4	Putative SCF ubiquitin ligase, Rbx1 component.	Uncharacterized protein.	0.561
PMG11_01065	PMG11_10977	A0A0F7TE19	A0A0F7U456	Putative SCF ubiquitin ligase, Rbx1 component.	T5orf172 domain-containing protein.	0.654
PMG11_01079	PMG11_00244	A0A0F7TGZ2	A0A0F7TBF3	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	Putative RNA polymerase II assessory factor Cdc73p.	0.999
PMG11_01079	PMG11_01065	A0A0F7TGZ2	A0A0F7TE19	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	Putative SCF ubiquitin ligase, Rbx1 component.	0.740
PMG11_01079	PMG11_06686	A0A0F7TGZ2	A0A0F7TMV1	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	CPSF_A domain-containing protein.	0.731
PMG11_01079	PMG11_07333	A0A0F7TGZ2	A0A0F7TPP3	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	Putative Function: CUL-4A of H. sapiens is a member of the cullin/Cdc53 family of proteins; Belongs to the cullin family.	0.674
PMG11_01079	PMG11_07770	A0A0F7TGZ2	A0A0F7TUP4	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	Uncharacterized protein.	0.999
PMG11_01079	PMG11_10977	A0A0F7TGZ2	A0A0F7U456	Putative TPR-containing nuclear phosphoprotein that regulates K( ) uptake.	T5orf172 domain-containing protein.	0.746
PMG11_05370	PMG11_05934	A0A0F7VFC2	A0A0F7TKD7	Putative Elongation factor Tu GTP binding domain-containing protein.	Uncharacterized protein.	0.891
PMG11_05370	PMG11_07900	A0A0F7VFC2	A0A0F7TRD6	Putative Elongation factor Tu GTP binding domain-containing protein.	Putative DEAD/DEAH box RNA helicase.	0.910