STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMG11_05063Protein kinase domain-containing protein. (405 aa)    
Predicted Functional Partners:
PMG11_02710
Putative Pre-RNA splicing factor Srp2.
    
 0.593
PEBR_42333
Putative pre-mRNA splicing factor (Srp1).
    
 0.593
PMG11_10285
Putative Pre-mRNA-splicing factor cef1.
    
   0.528
PMG11_07430
Putative U1 small nuclear ribonucleoprotein 70 kDa.
    
 0.480
PMG11_08482
Putative mRNA cleavage and polyadenylation factor I complex.
    
 0.461
PMG11_09673
Putative Polyadenylation factor subunit CstF64.
    
 0.461
Your Current Organism:
Penicillium brasilianum
NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.