STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMG11_03189Putative Cap binding protein. (827 aa)    
Predicted Functional Partners:
cbc2
Nuclear cap-binding protein subunit 2.
   
 0.999
PMG11_06351
Putative Remark: a splice site was detected upstream of the START codon.
   
 0.988
PMG11_01682
Putative Small nuclear ribonucleoprotein-associated protein B.
    
 0.984
PMG11_04452
RanBD1 domain-containing protein.
   
 0.984
PMG11_07337
Small nuclear ribonucleoprotein Sm D2.
    
 0.980
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.976
PMG11_01975
Putative WD repeat-containing protein 5B.
   
  0.975
snrpd3
Small nuclear ribonucleoprotein Sm D3.
    
 0.973
PMG11_05229
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.973
PMG11_06493
Small nuclear ribonucleoprotein G.
    
  0.967
Your Current Organism:
Penicillium brasilianum
NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.