STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PMG11_03967Putative UBX domain protein. (520 aa)    
Predicted Functional Partners:
PMG11_08007
UBX domain-containing protein.
    
 0.965
cdc48
Putative Cell division cycle protein 48; Belongs to the AAA ATPase family.
    
 0.962
PMG11_08946
Uncharacterized protein.
    
 0.959
PMG11_00286
Putative Nuclear protein localization protein 4.
    
 
 0.949
PMG11_06245
PRKCSH domain-containing protein.
    
 
 0.945
PMG11_04753
Uncharacterized protein.
    
 
 0.944
PMG11_08841
Putative Complex: Ufd3p is an in vivo ligand of Cdc48p.
   
 
 0.942
PMG11_03411
UBX domain-containing protein.
    
 
 0.942
PMG11_05629
UBX domain-containing protein.
   
 0.934
PMG11_10562
Putative UBX domain protein.
   
 0.934
Your Current Organism:
Penicillium brasilianum
NCBI taxonomy Id: 104259
Other names: ATCC 12072, CBS 253.55, FRR 3466, P. brasilianum, Penicillium sp. 028M, Penicillium sp. FKI-3368, QM 6947
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.