STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF54037.1Hydrophobe/amphiphile efflux-1 (HAE1) family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1046 aa)    
Predicted Functional Partners:
SHF54017.1
Outer membrane protein, multidrug efflux system.
 
 0.977
SHF54054.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.934
SHG06298.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.847
SHG06339.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 0.797
SHF87107.1
Membrane fusion protein, multidrug efflux system; Manually curated; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.784
SHF87067.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 0.755
SHG17190.1
Membrane fusion protein, cobalt-zinc-cadmium efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.673
SHF54002.1
AraC-type DNA-binding protein.
 
 
   0.669
SHF62539.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.557
SHG00737.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.533
Your Current Organism:
Tenacibaculum mesophilum
NCBI taxonomy Id: 104268
Other names: CIP 107215, DSM 13764, IFO 16307, NBRC 16307, T. mesophilum, Tenacibaculum mesophilum Suzuki et al. 2001
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