STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kptAPutative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (184 aa)    
Predicted Functional Partners:
SHF55770.1
ADP-ribosylglycohydrolase.
 
   
 0.848
SHF55812.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
 
  
 0.837
SHF55855.1
Serine/threonine protein phosphatase 1.
 
     0.829
SHF55793.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
  
  
 0.796
Prs
Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family.
  
    0.714
SHF55730.1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
 
     0.652
SHF55877.1
Hypothetical protein.
       0.578
SHF55904.1
Hypothetical protein.
       0.578
SHF55918.1
Nicotinamide phosphoribosyltransferase; Belongs to the NAPRTase family.
       0.473
SHG01935.1
tRNA-splicing ligase RtcB.
 
   
 0.470
Your Current Organism:
Tenacibaculum mesophilum
NCBI taxonomy Id: 104268
Other names: CIP 107215, DSM 13764, IFO 16307, NBRC 16307, T. mesophilum, Tenacibaculum mesophilum Suzuki et al. 2001
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