STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF57421.1Hypothetical protein. (256 aa)    
Predicted Functional Partners:
SHF57398.1
Lipopolysaccharide-assembly.
 
    0.897
SecG
Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.891
SHF57387.1
Transcriptional regulator.
       0.740
SHF50983.1
Hypothetical protein.
  
     0.710
SHF68531.1
Sporulation related domain-containing protein.
 
     0.704
SHG06920.1
Hypothetical protein.
  
     0.701
SHF90999.1
Family of unknown function; Manually curated.
  
     0.672
SHF62805.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.660
GldM
Protein involved in gliding motility GldM.
 
     0.643
SHF71690.1
Ig-like domain-containing protein.
  
     0.618
Your Current Organism:
Tenacibaculum mesophilum
NCBI taxonomy Id: 104268
Other names: CIP 107215, DSM 13764, IFO 16307, NBRC 16307, T. mesophilum, Tenacibaculum mesophilum Suzuki et al. 2001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.