STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF95700.1ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein. (286 aa)    
Predicted Functional Partners:
SHF95673.1
Uridine phosphorylase.
       0.836
SHF95659.1
Hypothetical protein.
       0.822
SHF95712.1
Hypothetical protein.
       0.705
nbaC
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family.
 
    0.642
SHF95623.1
Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
 
    0.617
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
  
   
 0.610
SHF95643.1
Translation initiation factor 1.
       0.584
SHF95613.1
Hypothetical protein.
 
    0.549
SHF97120.1
NAD(P)H-dependent FMN reductase.
  
  
 0.520
SHF66422.1
Tryptophan 2,3-dioxygenase apoenzyme.
 
     0.515
Your Current Organism:
Tenacibaculum mesophilum
NCBI taxonomy Id: 104268
Other names: CIP 107215, DSM 13764, IFO 16307, NBRC 16307, T. mesophilum, Tenacibaculum mesophilum Suzuki et al. 2001
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