STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF96515.14-oxalocrotonate tautomerase. (64 aa)    
Predicted Functional Partners:
SHF96551.1
Putative lumazine-binding.
 
     0.934
SHF51280.1
Aminomuconate-semialdehyde/2-hydroxymuconate-6- semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.906
SHF96532.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
   
 0.862
SHF96499.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
     0.563
SHF58834.1
Protein of unknown function.
  
     0.427
Your Current Organism:
Tenacibaculum mesophilum
NCBI taxonomy Id: 104268
Other names: CIP 107215, DSM 13764, IFO 16307, NBRC 16307, T. mesophilum, Tenacibaculum mesophilum Suzuki et al. 2001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.