STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG09134.1Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. (706 aa)    
Predicted Functional Partners:
SHG09114.1
Predicted metal-dependent phosphohydrolase, HD superfamily.
       0.752
SHG09143.1
Hypothetical protein.
   
   0.589
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.569
SHG09181.1
Hypothetical protein.
       0.472
LpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.467
SHG09210.1
Cell wall-associated hydrolase, NlpC family.
       0.444
Your Current Organism:
Tenacibaculum mesophilum
NCBI taxonomy Id: 104268
Other names: CIP 107215, DSM 13764, IFO 16307, NBRC 16307, T. mesophilum, Tenacibaculum mesophilum Suzuki et al. 2001
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.