A0A074XN88 protein (Aureobasidium pullulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A074XN88

Fungal_trans domain-containing protein. (627 aa)

Predicted Functional Partners:

A0A074XP87

0.848

A0A074X1C8

0.840

A0A074XDY3

0.840

A0A074XE52

0.840

A0A074Y242

0.627

A0A074YA52

0.584

A0A074XHR6

0.582

A0A074XKI2

0.582

A0A074Y009

0.582

A0A074Y1G8

0.582

Your Current Organism:

Aureobasidium pullulans

NCBI taxonomy Id: 1043002
Other names: A. pullulans EXF-150, Aureobasidium pullulans EXF-150, Aureobasidium pullulans var. pullulans EXF-150

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A074X1C8	A0A074XDY3	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.967
A0A074X1C8	A0A074XE52	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A074X1C8	A0A074XN88	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.840
A0A074X1C8	A0A074XP87	Uncharacterized protein.	GDPD-domain-containing protein.	0.408
A0A074XDY3	A0A074X1C8	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.967
A0A074XDY3	A0A074XE52	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Uncharacterized protein.	0.965
A0A074XDY3	A0A074XN88	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Fungal_trans domain-containing protein.	0.840
A0A074XDY3	A0A074XP87	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	GDPD-domain-containing protein.	0.408
A0A074XE52	A0A074X1C8	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A074XE52	A0A074XDY3	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.965
A0A074XE52	A0A074XN88	Uncharacterized protein.	Fungal_trans domain-containing protein.	0.840
A0A074XE52	A0A074XP87	Uncharacterized protein.	GDPD-domain-containing protein.	0.408
A0A074XHR6	A0A074XKI2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD40 repeat-like protein.	0.999
A0A074XHR6	A0A074XN88	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Fungal_trans domain-containing protein.	0.582
A0A074XHR6	A0A074Y009	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Nucleolar complex protein.	0.999
A0A074XHR6	A0A074Y1G8	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
A0A074XHR6	A0A074Y242	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Putative HEAT repeat protein.	0.999
A0A074XHR6	A0A074YA52	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
A0A074XKI2	A0A074XHR6	WD40 repeat-like protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
A0A074XKI2	A0A074XN88	WD40 repeat-like protein.	Fungal_trans domain-containing protein.	0.582