Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
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Fusion
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A074WE93
Uncharacterized protein. (374 aa)
Predicted Functional Partners:
A0A074WWS2
Histidinol-phosphate aminotransferase.
0.607
A0A074WX27
Rubredoxin-NAD(+) reductase.
0.421
A0A074X5C7
Nitrite reductase.
0.421
Your Current Organism:
Aureobasidium namibiae
NCBI taxonomy Id: 1043004 Other names: A. namibiae CBS 147.97, Aureobasidium namibiae CBS 147.97, Aureobasidium pullulans var. namibiae CBS 147.97