A0A074YKJ9 protein (Aureobasidium subglaciale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A074YKJ9

Uncharacterized protein. (844 aa)

Predicted Functional Partners:

A0A074Y126

0.999

A0A074Y5V0

0.999

A0A074YE20

0.999

A0A074YN72

0.999

A0A074YSX3

0.999

A0A074Y3T9

0.998

A0A074YQB3

0.997

A0A074Y3W7

0.996

A0A074YEF8

0.996

A0A074Y9M4

0.987

Your Current Organism:

Aureobasidium subglaciale

NCBI taxonomy Id: 1043005
Other names: A. subglaciale EXF-2481, Aureobasidium pullulans var. subglaciale EXF-2481, Aureobasidium subglaciale EXF-2481

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A074Y126	A0A074Y3T9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A074Y126	A0A074Y3W7	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.995
A0A074Y126	A0A074Y5V0	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.999
A0A074Y126	A0A074Y9M4	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A074Y126	A0A074YE20	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A074Y126	A0A074YEF8	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.994
A0A074Y126	A0A074YKJ9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A074Y126	A0A074YN72	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.999
A0A074Y126	A0A074YQB3	Uncharacterized protein.	RING-type domain-containing protein.	0.997
A0A074Y126	A0A074YSX3	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
A0A074Y3T9	A0A074Y126	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A074Y3T9	A0A074Y3W7	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.986
A0A074Y3T9	A0A074Y5V0	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.997
A0A074Y3T9	A0A074Y9M4	Uncharacterized protein.	Uncharacterized protein.	0.781
A0A074Y3T9	A0A074YE20	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A074Y3T9	A0A074YEF8	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.986
A0A074Y3T9	A0A074YKJ9	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A074Y3T9	A0A074YN72	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.998
A0A074Y3T9	A0A074YQB3	Uncharacterized protein.	RING-type domain-containing protein.	0.968
A0A074Y3T9	A0A074YSX3	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999